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Categories:
Links:
- ARB software for sequence analysis
The ARB software is a graphically oriented package comprising various tools for sequence database handling and data analysis. A central database of processed (aligned) sequences and any type of additional data linked to the respective sequence entries is structured according to phylogeny or other user defined criteria.
http://www.arb-home.de/
- Center for Biological Sequence Analysis
The Center for Biological Sequence Analysis conducts basic research in bioinformatics, a rapidly growing area in the field of molecular biology.
http://www.cbs.dtu.dk/
- ClustalX
Clustal X is a windows interface for the ClustalW multiple sequence alignment program. It provides an integrated environment for performing multiple sequence and profile alignments and analysing the results.
http://www.icgeb.trieste.it/~netsrv/clustalx/clustalx.html
- Eisen Lab
Eisen's lab applies computational and experimental genomic approaches to study how genome sequences specify organismal form and function. The lab is located at the Lawrence Berkeley National Lab and the University of California at Berkeley.
http://rana.lbl.gov/
- Gene-Quantification.info
The site describes and summarises all technical aspects involved in quantitative gene expression analysis using real-time qPCR & qRT-PCR.
http://www.gene-quantification.info/
- Multi Locus Sequence Typing
MLST is a nucleotide sequence based approach for the unambiguous characterisation of isolates of bacteria and other organisms via the internet.
http://www.mlst.net/
- pDRAW32 DNA sequence analysis
updated
pDRAW32 is being developed as a freetime hobby project. It is far from finished, but as it has reached a point where it could be helpfull for many labs, it is now available to the scientific community.
http://www.acaclone.com/
- Phylip - Phylogeny Inference Software
PHYLIP (the PHYLogeny Inference Package) is a package of programs for inferring phylogenies (evolutionary trees).
http://evolution.genetics.washington.edu/phylip.html
- RnaViz
RnaViz is a user-friendly, portable, GUI program for producing publication-quality secondary structure drawings of RNA molecules.
http://rrna.uia.ac.be/rnaviz/
- The Open Bioinformatics Foundation
The goal of the foundation is to provide financial, administrative and technical assistance for our various open source life science projects.
http://www.open-bio.org/
- Translation Machine (DNA to protein)
Transeq translates nucleic acid sequences to the corresponding peptide sequence. It can translate in any of the 3 forward or three reverse sense frames, or in all three forward or reverse frames, or in all six frames.
http://www.ebi.ac.uk/emboss/transeq/
- TreeView
TreeView is a simple program for displaying phylogenies on Apple Macintosh and Windows PCs.
http://taxonomy.zoology.gla.ac.uk/rod/treeview.html
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